References¶
Varga, M., Fu, Y., Loggia, S., Yogurtcu, O.N., & Johnson, M.E. (2020). NERDSS: a non-equilibrium simulator for multibody self-assembly at the cellular scale. Biophysical Journal, 118(12), 3026-3040.
Johnson, M.E. (2018). Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction–Diffusion Algorithm. Journal of Physical Chemistry B, 122(48), 11771-11783.
Johnson, M.E., & Hummer, G. (2014). Free propagator reweighting integrator for single-particle dynamics in reaction-diffusion models of heterogeneous protein-protein interactions systems. Physical Review X, 4(3), 031037.
Yogurtcu, O.N., & Johnson, M.E. (2015). Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates. Journal of Chemical Physics, 143(8), 084117.
Yogurtcu, O.N., & Johnson, M.E. (2018). Cytoplasmic proteins can exploit membrane localization to trigger functional assembly. PLoS Computational Biology, 14(4), e1006031.