NERDSS Developer Guide

Refer to the serial NERDSS for a brief description of the serial NERDSS Implementation.

• Key Data Structures
• Volume Exclusion Implementation
• Enforcement of Reaction and Diffusion Events per Timestep (Δt)
• Handling High Reaction Probabilities
• Syntax and Formatting
• Adding Input Parameters
• Adding a New Reaction Type
• Debugging
• Compiling
• Profiling